Package: growthcleanr 2.2.3

Carrie Daymont

growthcleanr: Data Cleaner for Anthropometric Measurements

Identifies implausible anthropometric (e.g., height, weight) measurements in irregularly spaced longitudinal datasets, such as those from electronic health records.

Authors:Carrie Daymont [ctb, cre], Robert Grundmeier [aut], Jeffrey Miller [aut], Diego Campos [aut], Dan Chudnov [ctb], Hannah De los Santos [ctb], Lusha Cao [ctb], Steffani Silva [ctb], Hanzhe Zhang [ctb], Matt Boyas [ctb], David Freedman [ctb], Andreas Achilleos [ctb], Jessica Butts [ctb], Sheila Nguyen [ctb], Taraneh Soleymani [ctb], Max Olivier [ctb]

growthcleanr_2.2.3.tar.gz
growthcleanr_2.2.3.zip(r-4.7-any)growthcleanr_2.2.3.zip(r-4.6-any)growthcleanr_2.2.3.zip(r-4.5-any)
growthcleanr_2.2.3.tgz(r-4.6-any)growthcleanr_2.2.3.tgz(r-4.5-any)
growthcleanr_2.2.3.tar.gz(r-4.7-any)growthcleanr_2.2.3.tar.gz(r-4.6-any)
growthcleanr_2.2.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
growthcleanr/json (API)

# Install 'growthcleanr' in R:
install.packages('growthcleanr', repos = c('https://growth-data-tools.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/carriedaymont/growthcleanr/issues

Datasets:

On CRAN:

Conda:

ehrehr-data

6.21 score 19 stars 82 scripts 601 downloads 12 exports 43 dependencies

Last updated from:ba6c676a05. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK150
source / vignettesOK202
linux-releaseOK163
macos-releaseOK168
macos-oldrelOK136
windows-develOK106
windows-releaseOK90
windows-oldrelOK90
wasm-releaseOK98

Exports:acf_answersadjustcarryforwardcleangrowthewmaext_bmizlongwideread_anthrorecode_sexsd_mediansimple_bmisplitinputtestacf

Dependencies:bitbit64clicliprcodetoolscpp11crayondata.tabledoParalleldplyrforcatsforeachgenericsgluehavenhmsiteratorslabelledlifecyclemagrittrpillarpkgconfigplyrprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6Rcppreadrrlangstringistringrtibbletidyrtidyselecttzdbutf8vctrsvroomwithr

Readme and manuals

Help Manual

Help pageTopics
Answers for adjustcarryforwardacf_answers
adjustcarryforward 'adjustcarryforward' Uses absolute height velocity to identify values excluded as carried forward values for reinclusion.adjustcarryforward
BMI Anthrobmianthro
CDC BMI reference dataCDCref_d
Clean growth measurementscleangrowth
Exponentially Weighted Moving Average (EWMA)ewma
Calculate extended BMI measuresext_bmiz
CDC Growth Percentile Tablegrowth_cdc_ext
CDC Growth Percentile Table for Infantsgrowth_cdc_ext_infants
WHO Growth Percentile Tablegrowth_who_ext
Length to Age Tablelenanthro
Transform data in growthcleanr format into wide structure for BMI calculationlongwide
NHANES reference mediansnhanes-reference-medians
Infants reference mediansrc-reference-medians
Function to calculate z-scores and csd-scores based on anthro tables.read_anthro
Recode binary sex variable for compatibilityrecode_sex
Fenton-Based Corrected Age Reference (Weight to GA Lookup)ref_for_corraga
Fenton-Based Corrected Z-Score Referenceref_for_corrz
Calculate median SD score by age for each parameter.sd_median
Compute BMI using standard formulasimple_bmi
Split input data into multiple filessplitinput
syngrowthsyngrowth
Tanner Growth Velocity Tabletanner_ht_vel
Tanner Growth Velocity Table for Infantstanner_ht_vel_rev
Tanner Growth Velocity Table with (2sigma)tanner_ht_vel_with_2sd
CDC SAS BMI Outputtest_syngrowth_sas_output_compare
CDC SAS BMI Inputtest_syngrowth_wide
Function to test adjust carried forwardtestacf
Weight Anthro Tableweianthro
WHO Maximum Head Circumference Velocity for (3sigma)who_hc_maxvel
WHO Head Circumference Velocity for (3sigma)who_hc_vel_3sd
WHO Maximum Height Velocity for (3sigma)who_ht_maxvel
WHO Maximum Height Velocity for (2sigma)who_ht_maxvel_2sd
WHO Height Velocity for (2sigma)who_ht_vel_2sd
WHO Height Velocity for (3sigma)who_ht_vel_3sd